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Mapping of CD34 Primary Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on CD34 Primary Cells, Donor UW RO 01536 were mapped to the human genome using Pash.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:RI:20100517:01--ChIP:Thanh:20100504:01:Mobilized CD34:WCE.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.CD34_Primary_Cells.Input.UW_RO_01536.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0065
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.0067
HOTSPOT_PERCENTILE: 23
IROC_SCORE: 0.9794
IROC_PERCENTILE: 85
POISSON_SCORE: 0.2227
POISSON_PERCENTILE: 42
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.CD34_Primary_Cells.Input.UW_RO_01536.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0065
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.0067
HOTSPOT_PERCENTILE: 23
IROC_SCORE: 0.9794
IROC_PERCENTILE: 85
POISSON_SCORE: 0.2227
POISSON_PERCENTILE: 42
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