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Raw Signal Density Graphs of H1 Cell Line Histone H3K4me2 ChIP-Seq Data
Illumina Histone H3K4me2 ChIP-Seq read mappings from the H1 Cell Line, Library LL322 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me2.hESC-02.01-renlab.H3K4me2.hESC-01.01.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.H3K4me2.LL322.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H3K4me2 22
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line Histone H3K4me2 Library LL322 EA Release 2
NUMBER_OF_H3K4me2_EXPERIMENTS_SCORED: 8
FINDPEAKS_SCORE: 0.6379
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.6394
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.9995
IROC_PERCENTILE: 100
POISSON_SCORE: 0.7027
POISSON_PERCENTILE: 75
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.H3K4me2.LL322.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H3K4me2 22
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line Histone H3K4me2 Library LL322 EA Release 2
NUMBER_OF_H3K4me2_EXPERIMENTS_SCORED: 8
FINDPEAKS_SCORE: 0.6379
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.6394
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.9995
IROC_PERCENTILE: 100
POISSON_SCORE: 0.7027
POISSON_PERCENTILE: 75
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