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Mapping of H1 Cell Line Histone H3K9me3 ChIP-Seq Data
Illumina reads produced by Histone H3K9me3 ChIP-Seq on the H1 Cell Line, Library LL218 were mapped to the human genome using Pash.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K9me3.hESC-02.01-renlab.H3K9me3.hESC-02.02-renlab.H3K9me3.CDI-01.01.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1.H3K9me3.LL218.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED: 59
FINDPEAKS_SCORE: 0.4171
FINDPEAKS_PERCENTILE:
HOTSPOT_SCORE: 0.4557
HOTSPOT_PERCENTILE:
IROC_SCORE: 0.977
IROC_PERCENTILE:
POISSON_SCORE: 0.5872
POISSON_PERCENTILE:
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1.H3K9me3.LL218.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED: 59
FINDPEAKS_SCORE: 0.4171
FINDPEAKS_PERCENTILE:
HOTSPOT_SCORE: 0.4557
HOTSPOT_PERCENTILE:
IROC_SCORE: 0.977
IROC_PERCENTILE:
POISSON_SCORE: 0.5872
POISSON_PERCENTILE:
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