|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of IMR90 Cell Line Histone H3K4me3 ChIP-Seq Data
Illumina reads produced by Histone H3K4me3 ChIP-Seq on the IMR90 Cell Line, Library LL221 were mapped to the human genome using Pash.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K4me3.IMR90-01.01.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.IMR90.H3K4me3.LL221.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 62
FINDPEAKS_SCORE: 0.909
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.8482
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9994
IROC_PERCENTILE: 56
POISSON_SCORE: 0.9124
POISSON_PERCENTILE: 100
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.IMR90.H3K4me3.LL221.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 62
FINDPEAKS_SCORE: 0.909
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.8482
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9994
IROC_PERCENTILE: 56
POISSON_SCORE: 0.9124
POISSON_PERCENTILE: 100
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |