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Raw Signal Density Graphs of H1 Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H1 Cell Line, Library TOTAL-H1EScd1 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: HS1028-1_3061PAAXX-HS1028-1_30WLMAAXX-HS1028-1_305Y8AAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.Input.TOTAL-H1EScd1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 Input d1
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line ChIP-Seq Input Library TOTAL-H1EScd1 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 67
FINDPEAKS_SCORE: 0.0059
FINDPEAKS_PERCENTILE: 19
HOTSPOT_SCORE: 0.033
HOTSPOT_PERCENTILE: 42
IROC_SCORE: 0.947
IROC_PERCENTILE: 71
POISSON_SCORE: 0.186
POISSON_PERCENTILE: 19
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.Input.TOTAL-H1EScd1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 Input d1
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line ChIP-Seq Input Library TOTAL-H1EScd1 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 67
FINDPEAKS_SCORE: 0.0059
FINDPEAKS_PERCENTILE: 19
HOTSPOT_SCORE: 0.033
HOTSPOT_PERCENTILE: 42
IROC_SCORE: 0.947
IROC_PERCENTILE: 71
POISSON_SCORE: 0.186
POISSON_PERCENTILE: 19
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