|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of Breast Myoepithelial Cells Histone H3K9ac ChIP-Seq Data
Illumina reads produced by Histone H3K9ac ChIP-Seq on Breast Myoepithelial Cells, Donor RM080 were mapped to the human genome using Pash.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: HS2764-1_629WHAAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM080.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K9ac_EXPERIMENTS_SCORED: 35
FINDPEAKS_SCORE: 0.0568
FINDPEAKS_PERCENTILE: 6
HOTSPOT_SCORE: 0.1622
HOTSPOT_PERCENTILE: 26
IROC_SCORE: 0.8096
IROC_PERCENTILE: 3
POISSON_SCORE: 0.3481
POISSON_PERCENTILE: 40
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM080.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K9ac_EXPERIMENTS_SCORED: 35
FINDPEAKS_SCORE: 0.0568
FINDPEAKS_PERCENTILE: 6
HOTSPOT_SCORE: 0.1622
HOTSPOT_PERCENTILE: 26
IROC_SCORE: 0.8096
IROC_PERCENTILE: 3
POISSON_SCORE: 0.3481
POISSON_PERCENTILE: 40
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |