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Raw Signal Density Graphs of H1 Cell Line mRNA-Seq Data
Illumina mRNA-Seq read mappings from the H1 Cell Line, Library H1EScd1 batch2 vial2 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/10/27:
ANALYSIS XML file 'ucsf-ubc.mrna-seq.level.2.xml' uploaded
alias: HS1272-1_612FTAAXX-HS1272-1_42VR1AAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.mRNA-Seq.H1EScd1_batch2_vial2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 mRNA l2
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line mRNA-Seq Library H1EScd1 batch2 vial2 EA Release 2
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 4
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.50
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 25
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.mRNA-Seq.H1EScd1_batch2_vial2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 mRNA l2
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line mRNA-Seq Library H1EScd1 batch2 vial2 EA Release 2
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 4
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.50
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 25
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