|
|||||||||
Mapping of Peripheral Blood Mononuclear Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Peripheral Blood Mononuclear Primary Cells, Donor TC007 were mapped to the human genome using Pash.
Project News:
2010/10/26: ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: HS2631-1_70144AAXX-HS2631-1_623WAAAXX.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.MeDIP-Seq.TC007.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24 FINDPEAKS_SCORE: 0.3371 FINDPEAKS_PERCENTILE: 58 HOTSPOT_SCORE: 0.3767 HOTSPOT_PERCENTILE: 70 IROC_SCORE: 0.9584 IROC_PERCENTILE: 58 POISSON_SCORE: 0.6988 POISSON_PERCENTILE: 66 |
|||||||||
|
|||||||||