Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Peripheral Blood Mononuclear Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Peripheral Blood Mononuclear Primary Cells, Donor TC007 were mapped to the human genome using Pash.


Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded



alias: HS2631-1_70144AAXX-HS2631-1_623WAAAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.MeDIP-Seq.TC007.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.3371
FINDPEAKS_PERCENTILE: 58
HOTSPOT_SCORE: 0.3767
HOTSPOT_PERCENTILE: 70
IROC_SCORE: 0.9584
IROC_PERCENTILE: 58
POISSON_SCORE: 0.6988
POISSON_PERCENTILE: 66

 

 


Bioinformatics Research Laboratory © 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)