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Raw Signal Density Graphs of Breast Stem Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Breast Stem Cells, Donor RM070 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded



alias: HS2365-1_61Y3MAAXX-HS2365-1_61YUCAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Stem_Cells.MeDIP-Seq.RM070.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: BSC MeDIP 70
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Breast Stem Cells MeDIP-Seq Donor RM070 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.1364
FINDPEAKS_PERCENTILE: 16
HOTSPOT_SCORE: 0.3101
HOTSPOT_PERCENTILE: 41
IROC_SCORE: 0.9296
IROC_PERCENTILE: 37
POISSON_SCORE: 0.6761
POISSON_PERCENTILE: 37

 

 


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