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Raw Signal Density Graphs of CD4 Memory Primary Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from CD4 Memory Primary Cells, Donor TC007 were processed into density graphs of raw signal representing the aligned read density.

Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded


alias: HS2633-1_623WAAAXX-HS2633-1_705WMAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.CD4_Memory_Primary_Cells.MeDIP-Seq.TC007.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: CD4M MeDIP 07
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD CD4 Memory Primary Cells MeDIP-Seq Donor TC007 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.3969
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.3391
HOTSPOT_PERCENTILE: 50
IROC_SCORE: 0.9436
IROC_PERCENTILE: 50
POISSON_SCORE: 0.6872
POISSON_PERCENTILE: 50

 

 

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