Genboree BCM
Home Browser Tools Log Out Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Raw Signal Density Graphs of Peripheral Blood Mononuclear Primary Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Peripheral Blood Mononuclear Primary Cells, Donor TC007 were processed into density graphs of raw signal representing the aligned read density.

Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded


alias: HS2631-1_70144AAXX-HS2631-1_623WAAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.MeDIP-Seq.TC007.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: PBM MeDIP 07
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Peripheral Blood Mononuclear Primary Cells MeDIP-Seq Donor TC007 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.3371
FINDPEAKS_PERCENTILE: 58
HOTSPOT_SCORE: 0.3767
HOTSPOT_PERCENTILE: 70
IROC_SCORE: 0.9584
IROC_PERCENTILE: 58
POISSON_SCORE: 0.6988
POISSON_PERCENTILE: 66

 

 

Bioinformatics Research Laboratory © 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)