Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Fetal Brain Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Brain, Donor H-23266, Library DS14718 were mapped to the human genome using Pash.


Project News:
2010/10/22:
ANALYSIS XML file 'uw.chromatinAccessibility.level1.release2.xml' uploaded



alias: DS14718.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Brain.ChromatinAccessibility.H-23266.DS14718.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.5215
FINDPEAKS_PERCENTILE: 35
HOTSPOT_SCORE: 0.4083
HOTSPOT_PERCENTILE: 45
IROC_SCORE: 0.9954
IROC_PERCENTILE: 25
POISSON_SCORE: 0.5003
POISSON_PERCENTILE: 47

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)