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Mapping of IMR90 Cell Line Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the IMR90 Cell Line, Library DS13229 were mapped to the human genome using Pash.
Project News:
2010/10/22: ANALYSIS XML file 'uw.chromatinAccessibility.level1.release2.xml' uploaded
alias: DS13229.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.IMR90.ChromatinAccessibility.DS13229.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40 FINDPEAKS_SCORE: 0.4505 FINDPEAKS_PERCENTILE: 15 HOTSPOT_SCORE: 0.3425 HOTSPOT_PERCENTILE: 15 IROC_SCORE: 0.9962 IROC_PERCENTILE: 35 POISSON_SCORE: 0.4422 POISSON_PERCENTILE: 22 |
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