Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Raw Signal Density Graphs of UCSF-4* Cell Line smRNA-Seq Data
Illumina smRNA-Seq read mappings from the UCSF-4* Cell Line, Library m05796 were processed into density graphs of raw signal representing the aligned read density. If a read maps to more than one location, the density of that read at a specific location is calculated as 1/(number of mappings).


Project News:
2014/9/22:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.2.xml' uploaded



alias: M05796-1.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.UCSF-4star.smRNA-Seq.m05796.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: UCSF4* smRNA 96
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC UCSF-4* Cell Line smRNA-Seq Library m05796 EA Release 9
NUMBER_OF_MAPPED_READS: 11,211,292
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 74.05
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 9
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)