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Methylation Proportion Graphs of Brain Hippocampus Middle Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from Brain Hippocampus Middle, Donor 149 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
Project News:
2013/8/28: ANALYSIS XML file 'bi.bisulfite-seq.level.2.xml' uploaded
alias: WGBS_Lib 37.hg19.level.2.release.9
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.Brain_Hippocampus_Middle.Bisulfite-Seq.149.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: Bisulfite-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 0bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 2bp containing CpGs TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 9 BROWSER_TRACK_NAME: BHM BS 49 37 BROWSER_TRACK_DESCRIPTION: BI Brain Hippocampus Middle Bisulfite-Seq Donor 149 Library WGBS_Lib 37 EA Release 9 NUMBER_OF_MAPPED_READS: 694,854,894 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.32 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 12 MAXIMUM_REPLICATE_CORRELATION: 0.99 |
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