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Mapping of IMR90 Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the IMR90 cell line were mapped to the human genome (NCBI Build 36.1) using Pash.
Project News:
2009/12/18:
ANALYSIS XML file 'UW.IMR90.analysis.chromatinAccessibility.xml' uploaded
alias: UW.IMR90.ChromatinAccessibility.Level1.2
Analysis Center: EDACC
Experiment Refname: DS11759
Analysis File Type: .bam
Analysis File Name: UW.IMR90.rep1.ChromatinAccessibility.IMR90-DS11759.UWStam_090921_SOLEXA-1GA-1_0028_FC42YD0_4.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
Analysis Center: EDACC
Experiment Refname: DS11759
Analysis File Type: .bam
Analysis File Name: UW.IMR90.rep1.ChromatinAccessibility.IMR90-DS11759.UWStam_090921_SOLEXA-1GA-1_0028_FC42YD0_4.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
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