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Mapping of H1 MRE-Seq Data
Illumina reads produced by MRE-Seq for DNA methylation assessment in the H1 cell line were mapped to the human genome (NCBI Build 36.1) using Pash.
Project News:
2009/12/17:
ANALYSIS XML file 'ucsf-ubc.analysis.mre-seq.xml' uploaded
alias: UCSF-UBC.H1.MRE-Seq.Level1.8
Analysis Center: EDACC
Experiment Refname: HS1153-1_42F2TAAXX
Analysis File Type: .bam
Analysis File Name: UCSF-UBC.mre-seq.Run104205Lane1.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MRE-Seq
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
Analysis Center: EDACC
Experiment Refname: HS1153-1_42F2TAAXX
Analysis File Type: .bam
Analysis File Name: UCSF-UBC.mre-seq.Run104205Lane1.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MRE-Seq
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
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