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Mapping of Fetal Kidney Left Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Kidney Left, Donor H-24568, Library DNase.DS20920 were mapped to the human genome using Pash.
Project News:
2013/7/26:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DNase.DS20920.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24568.DNase.DS20920.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 60,393,843
FINDPEAKS_SCORE: 0.44
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.423
HOTSPOT_PERCENTILE: 61
IROC_SCORE: 0.9906
IROC_PERCENTILE: 28
POISSON_SCORE: 0.4954
POISSON_PERCENTILE: 65
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Kidney_Left.ChromatinAccessibility.H-24568.DNase.DS20920.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 60,393,843
FINDPEAKS_SCORE: 0.44
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.423
HOTSPOT_PERCENTILE: 61
IROC_SCORE: 0.9906
IROC_PERCENTILE: 28
POISSON_SCORE: 0.4954
POISSON_PERCENTILE: 65
MAXIMUM_REPLICATE_CORRELATION: 0.97
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