|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of H9 Derived Neuronal Progenitor Cultured Cells H3K36me3 ChIP-Seq Data
Illumina H3K36me3 ChIP-Seq read mappings from the H9 Derived Neuronal Progenitor Cultured Cells, Library Lib:RI:20101012:11--ChIP:MA:20100927:11:hNP (ES H9 derived Nuronal Progenitors):H3K36Me3, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib:RI:20101012:11--ChIP:MA:20100927:11:hNP (ES H9 derived Nuronal Progenitors):H3K36Me3-Lib EpiLabSPL Row 1794.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K36me3.113.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HDNP H3K36me3 e3
BROWSER_TRACK_DESCRIPTION: BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library Lib:RI:20101012:11--ChIP:MA:20100927:11:hNP (ES H9 derived Nuronal Progenitors):H3K36Me3 EA Release 9
NUMBER_OF_MAPPED_READS: 64,319,157
FINDPEAKS_SCORE: 0.5731
FINDPEAKS_PERCENTILE: 98
HOTSPOT_SCORE: 0.398
HOTSPOT_PERCENTILE: 89
IROC_SCORE: 0.9979
IROC_PERCENTILE: 96
POISSON_SCORE: 0.7198
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K36me3.113.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HDNP H3K36me3 e3
BROWSER_TRACK_DESCRIPTION: BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K36me3 Library Lib:RI:20101012:11--ChIP:MA:20100927:11:hNP (ES H9 derived Nuronal Progenitors):H3K36Me3 EA Release 9
NUMBER_OF_MAPPED_READS: 64,319,157
FINDPEAKS_SCORE: 0.5731
FINDPEAKS_PERCENTILE: 98
HOTSPOT_SCORE: 0.398
HOTSPOT_PERCENTILE: 89
IROC_SCORE: 0.9979
IROC_PERCENTILE: 96
POISSON_SCORE: 0.7198
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: NA
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |