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Raw Signal Density Graphs of Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27ac ChIP-Seq Data
Illumina H3K27ac ChIP-Seq read mappings from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 58, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 997.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27ac.58.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: BMDMSC H3K27ac 58 97
BROWSER_TRACK_DESCRIPTION: BI Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K27ac Donor 58 Library DNA_Lib 997 EA Release 9
NUMBER_OF_MAPPED_READS: 22,060,696
FINDPEAKS_SCORE: 0.7262
FINDPEAKS_PERCENTILE: 96
HOTSPOT_SCORE: 0.7145
HOTSPOT_PERCENTILE: 96
IROC_SCORE: 0.9997
IROC_PERCENTILE: 96
POISSON_SCORE: 0.7491
POISSON_PERCENTILE: 96
MAXIMUM_REPLICATE_CORRELATION: 0.95
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27ac.58.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: BMDMSC H3K27ac 58 97
BROWSER_TRACK_DESCRIPTION: BI Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K27ac Donor 58 Library DNA_Lib 997 EA Release 9
NUMBER_OF_MAPPED_READS: 22,060,696
FINDPEAKS_SCORE: 0.7262
FINDPEAKS_PERCENTILE: 96
HOTSPOT_SCORE: 0.7145
HOTSPOT_PERCENTILE: 96
IROC_SCORE: 0.9997
IROC_PERCENTILE: 96
POISSON_SCORE: 0.7491
POISSON_PERCENTILE: 96
MAXIMUM_REPLICATE_CORRELATION: 0.95
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