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Raw Signal Density Graphs of H9 Derived Neuronal Progenitor Cultured Cells H3K9me3 ChIP-Seq Data
Illumina H3K9me3 ChIP-Seq read mappings from the H9 Derived Neuronal Progenitor Cultured Cells, Library Lib EpiLabSPL Row 1792, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib EpiLabSPL Row 1792-Lib:RI:20101012:09--ChIP:MA:20100927:09:hNP (ES H9 derived Nuronal Progenitors):H3K9Me3.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K9me3.113.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HDNP H3K9me3 92
BROWSER_TRACK_DESCRIPTION: BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K9me3 Library Lib EpiLabSPL Row 1792 EA Release 9
NUMBER_OF_MAPPED_READS: 49,908,005
FINDPEAKS_SCORE: 0.0326
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.1043
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.8484
IROC_PERCENTILE: 60
POISSON_SCORE: 0.2907
POISSON_PERCENTILE: 48
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K9me3.113.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HDNP H3K9me3 92
BROWSER_TRACK_DESCRIPTION: BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K9me3 Library Lib EpiLabSPL Row 1792 EA Release 9
NUMBER_OF_MAPPED_READS: 49,908,005
FINDPEAKS_SCORE: 0.0326
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.1043
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.8484
IROC_PERCENTILE: 60
POISSON_SCORE: 0.2907
POISSON_PERCENTILE: 48
MAXIMUM_REPLICATE_CORRELATION: NA
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