|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of H9 Derived Neuronal Progenitor Cultured Cells H3K9me3 ChIP-Seq Data
Illumina reads produced by H3K9me3 ChIP-Seq on the H9 Derived Neuronal Progenitor Cultured Cells, Library Lib EpiLabSPL Row 1792, were mapped to the human genome using Pash.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib EpiLabSPL Row 1792-Lib:RI:20101012:09--ChIP:MA:20100927:09:hNP (ES H9 derived Nuronal Progenitors):H3K9Me3.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K9me3.113.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 49,908,005
FINDPEAKS_SCORE: 0.0326
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.1043
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.8484
IROC_PERCENTILE: 60
POISSON_SCORE: 0.2907
POISSON_PERCENTILE: 48
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K9me3.113.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 49,908,005
FINDPEAKS_SCORE: 0.0326
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.1043
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.8484
IROC_PERCENTILE: 60
POISSON_SCORE: 0.2907
POISSON_PERCENTILE: 48
MAXIMUM_REPLICATE_CORRELATION: NA
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |