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Raw Signal Density Graphs of Breast Fibroblast Primary Cells H3K4me3 ChIP-Seq Data
Illumina H3K4me3 ChIP-Seq read mappings from Breast Fibroblast Primary Cells, Donor RM071 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A21641-1.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Fibroblast_Primary_Cells.H3K4me3.RM071.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: BF H3K4me3 71 41
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K4me3 Donor RM071 Library A21641 EA Release 9
NUMBER_OF_MAPPED_READS: 18,886,092
FINDPEAKS_SCORE: 0.2059
FINDPEAKS_PERCENTILE: 16
HOTSPOT_SCORE: 0.2175
HOTSPOT_PERCENTILE: 13
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.2197
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Fibroblast_Primary_Cells.H3K4me3.RM071.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: BF H3K4me3 71 41
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K4me3 Donor RM071 Library A21641 EA Release 9
NUMBER_OF_MAPPED_READS: 18,886,092
FINDPEAKS_SCORE: 0.2059
FINDPEAKS_PERCENTILE: 16
HOTSPOT_SCORE: 0.2175
HOTSPOT_PERCENTILE: 13
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.2197
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: NA
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