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Raw Signal Density Graphs of Peripheral Blood Mononuclear Primary Cells Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Peripheral Blood Mononuclear Primary Cells, Donor TC015, Library A21632 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A21632-1.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.Input.TC015.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: PBM Input 15 32
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells ChIP-Seq Input Donor TC015 Library A21632 EA Release 9
NUMBER_OF_MAPPED_READS: 24,367,081
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.0075
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9733
IROC_PERCENTILE: 68
POISSON_SCORE: 0.0305
POISSON_PERCENTILE: 28
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.Input.TC015.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: PBM Input 15 32
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells ChIP-Seq Input Donor TC015 Library A21632 EA Release 9
NUMBER_OF_MAPPED_READS: 24,367,081
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.0075
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9733
IROC_PERCENTILE: 68
POISSON_SCORE: 0.0305
POISSON_PERCENTILE: 28
MAXIMUM_REPLICATE_CORRELATION: 0.99
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