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Raw Signal Density Graphs of Placenta Amnion H3K27me3 ChIP-Seq Data
Illumina H3K27me3 ChIP-Seq read mappings from Placenta Amnion, Donor CTL02 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded



alias: A21720-1.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Placenta_Amnion.H3K27me3.CTL02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: PA H3K27me3 02 20
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Placenta Amnion Histone H3K27me3 Donor CTL02 Library A21720 EA Release 9
NUMBER_OF_MAPPED_READS: 27,757,878
FINDPEAKS_SCORE: 0.018
FINDPEAKS_PERCENTILE: 14
HOTSPOT_SCORE: 0.0551
HOTSPOT_PERCENTILE: 5
IROC_SCORE: 0.8982
IROC_PERCENTILE: 56
POISSON_SCORE: 0.1416
POISSON_PERCENTILE: 2
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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