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Raw Signal Density Graphs of Neurosphere Cultured Cells Ganglionic Eminence Derived H3K36me3 ChIP-Seq Data
Illumina H3K36me3 ChIP-Seq read mappings from Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC04 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A19307-1.hg19.level.2.release.9
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K36me3.HuFNSC04.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 9 BROWSER_TRACK_NAME: NGED H3K36me3 04 07 BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 Donor HuFNSC04 Library A19307 EA Release 9 NUMBER_OF_MAPPED_READS: 49,001,087 FINDPEAKS_SCORE: 0.351 FINDPEAKS_PERCENTILE: 67 HOTSPOT_SCORE: 0.3024 HOTSPOT_PERCENTILE: 52 IROC_SCORE: 0.9774 IROC_PERCENTILE: 52 POISSON_SCORE: 0.5755 POISSON_PERCENTILE: 78 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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