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Mapping of Neurosphere Cultured Cells Ganglionic Eminence Derived Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC03 were mapped to the human genome using Pash.
Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A16057-1.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.Input.HuFNSC03.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 24,250,518
FINDPEAKS_SCORE: 0.0047
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.0737
HOTSPOT_PERCENTILE: 80
IROC_SCORE: 0.6062
IROC_PERCENTILE: 29
POISSON_SCORE: 0.0955
POISSON_PERCENTILE: 72
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.Input.HuFNSC03.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 24,250,518
FINDPEAKS_SCORE: 0.0047
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.0737
HOTSPOT_PERCENTILE: 80
IROC_SCORE: 0.6062
IROC_PERCENTILE: 29
POISSON_SCORE: 0.0955
POISSON_PERCENTILE: 72
MAXIMUM_REPLICATE_CORRELATION: 0.98
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