Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Placenta Amnion H3K27ac ChIP-Seq Data
Illumina reads produced by H3K27ac ChIP-Seq on Placenta Amnion, Donor CTL02 were mapped to the human genome using Pash.


Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded



alias: A21722-1.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Placenta_Amnion.H3K27ac.CTL02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 28,256,387
FINDPEAKS_SCORE: 0.0041
FINDPEAKS_PERCENTILE: 1
HOTSPOT_SCORE: 0.0754
HOTSPOT_PERCENTILE: 7
IROC_SCORE: 0.658
IROC_PERCENTILE: 1
POISSON_SCORE: 0.1914
POISSON_PERCENTILE: 4
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)