|
|||||||||
Mapping of Placenta Amnion H3K27ac ChIP-Seq Data
Illumina reads produced by H3K27ac ChIP-Seq on Placenta Amnion, Donor CTL02 were mapped to the human genome using Pash.
Project News:
2013/6/13: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A21722-1.hg19.level.1.release.9
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Placenta_Amnion.H3K27ac.CTL02.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 9 NUMBER_OF_MAPPED_READS: 28,256,387 FINDPEAKS_SCORE: 0.0041 FINDPEAKS_PERCENTILE: 1 HOTSPOT_SCORE: 0.0754 HOTSPOT_PERCENTILE: 7 IROC_SCORE: 0.658 IROC_PERCENTILE: 1 POISSON_SCORE: 0.1914 POISSON_PERCENTILE: 4 MAXIMUM_REPLICATE_CORRELATION: NA |
|||||||||
|
|||||||||