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Mapping of Peripheral Blood Mononuclear Primary Cells Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Peripheral Blood Mononuclear Primary Cells, Donor TC015, Library A21632 were mapped to the human genome using Pash.
Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A21632-1.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.Input.TC015.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 24,367,081
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.0075
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9733
IROC_PERCENTILE: 68
POISSON_SCORE: 0.0305
POISSON_PERCENTILE: 28
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.Input.TC015.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 24,367,081
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.0075
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9733
IROC_PERCENTILE: 68
POISSON_SCORE: 0.0305
POISSON_PERCENTILE: 28
MAXIMUM_REPLICATE_CORRELATION: 0.99
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