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Raw Signal Density Graphs of Fetal Thymus H3K4me3 ChIP-Seq Data
Illumina H3K4me3 ChIP-Seq read mappings from Fetal Thymus, Donor H-24644, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13:
ANALYSIS XML file 'uw.chip-seq.level.2.xml' uploaded
alias: Histone.DS21539-Histone.DS21539.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Thymus.H3K4me3.H-24644.Histone.DS21539.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: FT H3K4me3 44 39
BROWSER_TRACK_DESCRIPTION: UW Fetal Thymus Histone H3K4me3 Donor H-24644 Library Histone.DS21539 EA Release 9
NUMBER_OF_MAPPED_READS: 25,565,772
FINDPEAKS_SCORE: 0.3697
FINDPEAKS_PERCENTILE: 39
HOTSPOT_SCORE: 0.3733
HOTSPOT_PERCENTILE: 34
IROC_SCORE: 0.9999
IROC_PERCENTILE: 47
POISSON_SCORE: 0.3727
POISSON_PERCENTILE: 34
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Thymus.H3K4me3.H-24644.Histone.DS21539.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: FT H3K4me3 44 39
BROWSER_TRACK_DESCRIPTION: UW Fetal Thymus Histone H3K4me3 Donor H-24644 Library Histone.DS21539 EA Release 9
NUMBER_OF_MAPPED_READS: 25,565,772
FINDPEAKS_SCORE: 0.3697
FINDPEAKS_PERCENTILE: 39
HOTSPOT_SCORE: 0.3733
HOTSPOT_PERCENTILE: 34
IROC_SCORE: 0.9999
IROC_PERCENTILE: 47
POISSON_SCORE: 0.3727
POISSON_PERCENTILE: 34
MAXIMUM_REPLICATE_CORRELATION: NA
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