|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of CD56 Primary Cells H3K36me3 ChIP-Seq Data
Illumina reads produced by H3K36me3 ChIP-Seq on CD56 Primary Cells, Donor RO 01679, were mapped to the human genome using Pash.
Project News:
2013/6/13:
ANALYSIS XML file 'uw.chip-seq.level.1.xml' uploaded
alias: Histone.DS22595-Histone.DS22595-Histone.DS22595.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.CD56_Primary_Cells.H3K36me3.RO_01679.Histone.DS22595.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 33,957,611
FINDPEAKS_SCORE: 0.4073
FINDPEAKS_PERCENTILE: 81
HOTSPOT_SCORE: 0.3243
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9937
IROC_PERCENTILE: 81
POISSON_SCORE: 0.5867
POISSON_PERCENTILE: 79
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.CD56_Primary_Cells.H3K36me3.RO_01679.Histone.DS22595.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 33,957,611
FINDPEAKS_SCORE: 0.4073
FINDPEAKS_PERCENTILE: 81
HOTSPOT_SCORE: 0.3243
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9937
IROC_PERCENTILE: 81
POISSON_SCORE: 0.5867
POISSON_PERCENTILE: 79
MAXIMUM_REPLICATE_CORRELATION: NA
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |