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Raw Signal Density Graphs of Gastric mRNA-Seq Data
Illumina mRNA-Seq read mappings from Gastric, Donor STL002 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/12:
ANALYSIS XML file 'ucsd.mrna-seq.level.2.xml' uploaded
alias: polyA-RNA-seq_STL002GA_r1a.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Gastric.mRNA-Seq.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Gastric mRNA 02
BROWSER_TRACK_DESCRIPTION: UCSD Gastric mRNA-Seq Donor STL002 Library polyA-RNA-seq_STL002GA_r1a EA Release 9
NUMBER_OF_MAPPED_READS: 45,454,114
PERCENT_READS_MAPPING_TO_UCSC_GENES: 80.5
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 6
MAXIMUM_REPLICATE_CORRELATION: 0.57
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Gastric.mRNA-Seq.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Gastric mRNA 02
BROWSER_TRACK_DESCRIPTION: UCSD Gastric mRNA-Seq Donor STL002 Library polyA-RNA-seq_STL002GA_r1a EA Release 9
NUMBER_OF_MAPPED_READS: 45,454,114
PERCENT_READS_MAPPING_TO_UCSC_GENES: 80.5
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 6
MAXIMUM_REPLICATE_CORRELATION: 0.57
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