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Raw Signal Density Graphs of Spleen H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from Spleen, Donor STL002, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.STL002SX.01.01.hg19.level.2.release.9
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.Spleen.H3K4me1.STL002.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 9 BROWSER_TRACK_NAME: Spleen H3K4me1 02 17 BROWSER_TRACK_DESCRIPTION: UCSD Spleen Histone H3K4me1 Donor STL002 Library AY517 EA Release 9 NUMBER_OF_MAPPED_READS: 39,926,841 FINDPEAKS_SCORE: 0.3 FINDPEAKS_PERCENTILE: 54 HOTSPOT_SCORE: 0.36 HOTSPOT_PERCENTILE: 54 IROC_SCORE: 0.97 IROC_PERCENTILE: 48 POISSON_SCORE: 0.56 POISSON_PERCENTILE: 77 MAXIMUM_REPLICATE_CORRELATION: 0.97 |
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