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Raw Signal Density Graphs of H1 BMP4 Derived Trophoblast Cultured Cells H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from the H1 BMP4 Derived Trophoblast Cultured Cells, Library AY258, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.BMP4T.04.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.AY258.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HBDT H3K4me1 58
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me1 Library AY258 EA Release 9
NUMBER_OF_MAPPED_READS: 25,986,913
FINDPEAKS_SCORE: 0.3934
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.4595
HOTSPOT_PERCENTILE: 79
IROC_SCORE: 0.9892
IROC_PERCENTILE: 67
POISSON_SCORE: 0.5538
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me1.AY258.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: HBDT H3K4me1 58
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me1 Library AY258 EA Release 9
NUMBER_OF_MAPPED_READS: 25,986,913
FINDPEAKS_SCORE: 0.3934
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.4595
HOTSPOT_PERCENTILE: 79
IROC_SCORE: 0.9892
IROC_PERCENTILE: 67
POISSON_SCORE: 0.5538
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: 0.98
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