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Raw Signal Density Graphs of Thymus Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Thymus, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.STL001TH.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Thymus.Input.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Thymus Input 01 95
BROWSER_TRACK_DESCRIPTION: UCSD Thymus ChIP-Seq Input Donor STL001 Library AY295 EA Release 9
NUMBER_OF_MAPPED_READS: 13,636,668
FINDPEAKS_SCORE: 0.0071
FINDPEAKS_PERCENTILE: 74
HOTSPOT_SCORE: 0.0829
HOTSPOT_PERCENTILE: 83
IROC_SCORE: 0.2395
IROC_PERCENTILE: 23
POISSON_SCORE: 0.1319
POISSON_PERCENTILE: 78
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Thymus.Input.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Thymus Input 01 95
BROWSER_TRACK_DESCRIPTION: UCSD Thymus ChIP-Seq Input Donor STL001 Library AY295 EA Release 9
NUMBER_OF_MAPPED_READS: 13,636,668
FINDPEAKS_SCORE: 0.0071
FINDPEAKS_PERCENTILE: 74
HOTSPOT_SCORE: 0.0829
HOTSPOT_PERCENTILE: 83
IROC_SCORE: 0.2395
IROC_PERCENTILE: 23
POISSON_SCORE: 0.1319
POISSON_PERCENTILE: 78
MAXIMUM_REPLICATE_CORRELATION: NA
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