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Raw Signal Density Graphs of Lung H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from Lung, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.STL001LG.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Lung.H3K4me1.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Lung H3K4me1 01 66
BROWSER_TRACK_DESCRIPTION: UCSD Lung Histone H3K4me1 Donor STL001 Library CY166 EA Release 9
NUMBER_OF_MAPPED_READS: 24,794,026
FINDPEAKS_SCORE: 0.2
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.29
HOTSPOT_PERCENTILE: 38
IROC_SCORE: 0.9427
IROC_PERCENTILE: 35
POISSON_SCORE: 0.47
POISSON_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.95
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Lung.H3K4me1.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Lung H3K4me1 01 66
BROWSER_TRACK_DESCRIPTION: UCSD Lung Histone H3K4me1 Donor STL001 Library CY166 EA Release 9
NUMBER_OF_MAPPED_READS: 24,794,026
FINDPEAKS_SCORE: 0.2
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.29
HOTSPOT_PERCENTILE: 38
IROC_SCORE: 0.9427
IROC_PERCENTILE: 35
POISSON_SCORE: 0.47
POISSON_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.95
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