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Mapping of Fetal Intestine Small Digital Genomic Footprinting Data
Illumina reads produced by Digital Genomic Footprinting on Fetal Intestine Small, Donor H-23769, Library DGF.DS17317 were mapped to the human genome using Pash.


Project News:
2012/12/31:
ANALYSIS XML file 'uw.digitalGenomicFootprinting.level.1.xml' uploaded



alias: DGF.DS17317.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Intestine_Small.Digital_Genomic_Footprinting.H-23769.DGF.DS17317.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Digital Genomic Footprinting
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 357,862,675
NUMBER_OF_DIGITAL_GENOMIC_FOOTPRINTING_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 11
FINDPEAKS_SCORE: 0.4001
FINDPEAKS_PERCENTILE: 18
HOTSPOT_SCORE: 0.3777
HOTSPOT_PERCENTILE: 18
IROC_SCORE: 0.9921
IROC_PERCENTILE: 45
POISSON_SCORE: 0.4441
POISSON_PERCENTILE: 27
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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