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Mapping of Penis Foreskin Melanocyte Primary Cells H3K4me1 ChIP-Seq Data
Illumina reads produced by H3K4me1 ChIP-Seq on Penis Foreskin Melanocyte Primary Cells, Donor skin03 were mapped to the human genome using Pash.
Project News:
2012/9/27: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.additional.xml' uploaded
alias: A15579-1.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.H3K4me1.skin03.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 56,786,318 NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15 FINDPEAKS_SCORE: 0.2804 FINDPEAKS_PERCENTILE: 53 HOTSPOT_SCORE: 0.3281 HOTSPOT_PERCENTILE: 40 IROC_SCORE: 0.9651 IROC_PERCENTILE: 47 POISSON_SCORE: 0.4973 POISSON_PERCENTILE: 53 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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