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Methylation Proportion Graphs of Brain Substantia Nigra RRBS Data
Illumina RRBS read mappings from Brain Substantia Nigra, Donor 149 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2012/9/27:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS_Lib 274.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.RRBS.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: BSN RRBS 49 74
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra RRBS Donor 149 Library RRBS_Lib 274 EA Release 8
NUMBER_OF_MAPPED_READS: 24,761,269
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 13
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 46
MAXIMUM_REPLICATE_CORRELATION: 0.64
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.RRBS.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: BSN RRBS 49 74
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra RRBS Donor 149 Library RRBS_Lib 274 EA Release 8
NUMBER_OF_MAPPED_READS: 24,761,269
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 13
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 46
MAXIMUM_REPLICATE_CORRELATION: 0.64
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