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Mapping of Penis Foreskin Keratinocyte Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Penis Foreskin Keratinocyte Primary Cells, Donor skin03 were mapped to the human genome using Pash.
Project News:
2012/9/6: ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: A14101-1.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Penis_Foreskin_Keratinocyte_Primary_Cells.MeDIP-Seq.skin03.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 42,871,476 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3 FINDPEAKS_SCORE: 0.6375 FINDPEAKS_PERCENTILE: 100 HOTSPOT_SCORE: 0.5906 HOTSPOT_PERCENTILE: 100 IROC_SCORE: 0.9919 IROC_PERCENTILE: 33 POISSON_SCORE: 0.617 POISSON_PERCENTILE: 67 MAXIMUM_REPLICATE_CORRELATION: 0.99 |
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