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Raw Signal Density Graphs of H1 Cell Line mRNA-Seq Data
Illumina mRNA-Seq read mappings from the H1 Cell Line, Library polyA-RNA-seq_h1_r2a were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/8/29:
ANALYSIS XML file 'ucsd.mrna-seq.level.2.xml' uploaded
alias: polyA-RNA-seq_h1_r2a.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.mRNA-Seq.polyA-RNA-seq_h1_r2a.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: H1 mRNA 2a
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line mRNA-Seq Library polyA-RNA-seq_h1_r2a EA Release 8
NUMBER_OF_MAPPED_READS: 327,201,303
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 74.93
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 5
MAXIMUM_REPLICATE_CORRELATION: 0.62
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.mRNA-Seq.polyA-RNA-seq_h1_r2a.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: H1 mRNA 2a
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line mRNA-Seq Library polyA-RNA-seq_h1_r2a EA Release 8
NUMBER_OF_MAPPED_READS: 327,201,303
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 74.93
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 5
MAXIMUM_REPLICATE_CORRELATION: 0.62
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