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Raw Signal Density Graphs of Esophagus H3K4me3 ChIP-Seq Data
Illumina H3K4me3 ChIP-Seq read mappings from Esophagus, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.STL003EG.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Esophagus.H3K4me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: Esophagus H3K4me3 03 82
BROWSER_TRACK_DESCRIPTION: UCSD Esophagus Histone H3K4me3 Donor STL003 Library AY182 EA Release 8
NUMBER_OF_MAPPED_READS: 16,576,428
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3911
FINDPEAKS_PERCENTILE: 57
HOTSPOT_SCORE: 0.4585
HOTSPOT_PERCENTILE: 64
IROC_SCORE: 0.9998
IROC_PERCENTILE: 67
POISSON_SCORE: 0.4456
POISSON_PERCENTILE: 64
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Esophagus.H3K4me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: Esophagus H3K4me3 03 82
BROWSER_TRACK_DESCRIPTION: UCSD Esophagus Histone H3K4me3 Donor STL003 Library AY182 EA Release 8
NUMBER_OF_MAPPED_READS: 16,576,428
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3911
FINDPEAKS_PERCENTILE: 57
HOTSPOT_SCORE: 0.4585
HOTSPOT_PERCENTILE: 64
IROC_SCORE: 0.9998
IROC_PERCENTILE: 67
POISSON_SCORE: 0.4456
POISSON_PERCENTILE: 64
MAXIMUM_REPLICATE_CORRELATION: NA
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