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Mapping of Penis Foreskin Fibroblast Primary Cells Digital Genomic Footprinting Data
Illumina reads produced by Digital Genomic Footprinting on Penis Foreskin Fibroblast Primary Cells, Donor skin01, Library DGF.DS18224 were mapped to the human genome using Pash.


Project News:
2012/6/26:
ANALYSIS XML file 'uw.digitalGenomicFootprinting.level.1.xml' uploaded



alias: DGF.DS18224.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Penis_Foreskin_Fibroblast_Primary_Cells.Digital_Genomic_Footprinting.skin01.DGF.DS18224.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Digital Genomic Footprinting
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 433,775,987
NUMBER_OF_DIGITAL_GENOMIC_FOOTPRINTING_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
FINDPEAKS_SCORE: 0.6769
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.6776
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9983
IROC_PERCENTILE: 40
POISSON_SCORE: 0.7024
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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