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Mapping of H1 Derived Mesenchymal Stem Cells Digital Genomic Footprinting Data
Illumina reads produced by Digital Genomic Footprinting on H1 Derived Mesenchymal Stem Cells, Library DGF.DS21042 were mapped to the human genome using Pash.
Project News:
2012/6/26: ANALYSIS XML file 'uw.digitalGenomicFootprinting.level.1.xml' uploaded
alias: DGF.DS21042.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.H1_Derived_Mesenchymal_Stem_Cells.Digital_Genomic_Footprinting.DGF.DS21042.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Digital Genomic Footprinting GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 243,488,451 NUMBER_OF_DIGITAL_GENOMIC_FOOTPRINTING_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5 FINDPEAKS_SCORE: 0.5147 FINDPEAKS_PERCENTILE: 80 HOTSPOT_SCORE: 0.5507 HOTSPOT_PERCENTILE: 80 IROC_SCORE: 1.0 IROC_PERCENTILE: 100 POISSON_SCORE: 0.5834 POISSON_PERCENTILE: 80 MAXIMUM_REPLICATE_CORRELATION: NA |
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