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Mapping of H1 Derived Mesenchymal Stem Cells Digital Genomic Footprinting Data
Illumina reads produced by Digital Genomic Footprinting on H1 Derived Mesenchymal Stem Cells, Library DGF.DS21042 were mapped to the human genome using Pash.


Project News:
2012/6/26:
ANALYSIS XML file 'uw.digitalGenomicFootprinting.level.1.xml' uploaded



alias: DGF.DS21042.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.H1_Derived_Mesenchymal_Stem_Cells.Digital_Genomic_Footprinting.DGF.DS21042.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Digital Genomic Footprinting
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 243,488,451
NUMBER_OF_DIGITAL_GENOMIC_FOOTPRINTING_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
FINDPEAKS_SCORE: 0.5147
FINDPEAKS_PERCENTILE: 80
HOTSPOT_SCORE: 0.5507
HOTSPOT_PERCENTILE: 80
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5834
POISSON_PERCENTILE: 80
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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