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Raw Signal Density Graphs of Fetal Brain Chromatin Accessibility Data
Illumina DNAse-Seq read mappings from Fetal Brain, Donor H-24279, Library DS20221 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/5/30:
ANALYSIS XML file 'uw.chromatin.accessibility.level.2.xml' uploaded
alias: DS20221.hg19.level.2.release.7
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Brain.ChromatinAccessibility.H-24279.DS20221.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: FB DNase 79 21
BROWSER_TRACK_DESCRIPTION: UW Fetal Brain DNase Hypersensitivity Donor H-24279 Library DS20221 EA Release 7
NUMBER_OF_MAPPED_READS: 36,163,799
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58
FINDPEAKS_SCORE: 0.3949
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.3885
HOTSPOT_PERCENTILE: 43
IROC_SCORE: 0.9902
IROC_PERCENTILE: 7
POISSON_SCORE: 0.4466
POISSON_PERCENTILE: 43
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Brain.ChromatinAccessibility.H-24279.DS20221.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: FB DNase 79 21
BROWSER_TRACK_DESCRIPTION: UW Fetal Brain DNase Hypersensitivity Donor H-24279 Library DS20221 EA Release 7
NUMBER_OF_MAPPED_READS: 36,163,799
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58
FINDPEAKS_SCORE: 0.3949
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.3885
HOTSPOT_PERCENTILE: 43
IROC_SCORE: 0.9902
IROC_PERCENTILE: 7
POISSON_SCORE: 0.4466
POISSON_PERCENTILE: 43
MAXIMUM_REPLICATE_CORRELATION: 0.97
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