|
|||||||||
Mapping of Fetal Brain MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Fetal Brain, Donor H-23284 were mapped to the human genome using Pash.
Project News:
2012/3/28: ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: A02299-1.hg19.level.1.release.6
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Fetal_Brain.MeDIP-Seq.H-23284.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 6 NUMBER_OF_MAPPED_READS: 68,648,894 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 2 FINDPEAKS_SCORE: 0.0805 FINDPEAKS_PERCENTILE: 50 HOTSPOT_SCORE: 0.249 HOTSPOT_PERCENTILE: 50 IROC_SCORE: 0.886 IROC_PERCENTILE: 50 POISSON_SCORE: 0.4054 POISSON_PERCENTILE: 50 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
|||||||||
|
|||||||||