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Mapping of Fetal Brain MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Fetal Brain, Donor H-23284 were mapped to the human genome using Pash.


Project News:
2012/3/28:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded



alias: A02299-1.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Fetal_Brain.MeDIP-Seq.H-23284.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 68,648,894
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 2
FINDPEAKS_SCORE: 0.0805
FINDPEAKS_PERCENTILE: 50
HOTSPOT_SCORE: 0.249
HOTSPOT_PERCENTILE: 50
IROC_SCORE: 0.886
IROC_PERCENTILE: 50
POISSON_SCORE: 0.4054
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: 0.98

 

 


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