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Raw Signal Density Graphs of Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K9me3 ChIP-Seq Data
Illumina Histone H3K9me3 ChIP-Seq read mappings from Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 60, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19: ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib EpiLabSPL Row 1405.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.60.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: CfBMDMSC H3K9me3 60 05 BROWSER_TRACK_DESCRIPTION: BI Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K9me3 Donor 60 Library Lib EpiLabSPL Row 1405 EA Release 5 NUMBER_OF_MAPPED_READS: 27,904,004 NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49 FINDPEAKS_SCORE: 0.0428 FINDPEAKS_PERCENTILE: 55 HOTSPOT_SCORE: 0.1121 HOTSPOT_PERCENTILE: 53 IROC_SCORE: 0.7284 IROC_PERCENTILE: 22 POISSON_SCORE: 0.3397 POISSON_PERCENTILE: 73 MAXIMUM_REPLICATE_CORRELATION: 0.97 |
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