|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of Adipose Derived Mesenchymal Stem Cell Cultured Cells Histone H3K4me3 ChIP-Seq Data
Illumina reads produced by Histone H3K4me3 ChIP-Seq on Adipose Derived Mesenchymal Stem Cell Cultured Cells, Donor 92, were mapped to the human genome using Pash.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib EpiLabSPL Row 1729.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.92.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,898,337
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5063
FINDPEAKS_PERCENTILE: 87
HOTSPOT_SCORE: 0.5236
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.9966
IROC_PERCENTILE: 33
POISSON_SCORE: 0.5549
POISSON_PERCENTILE: 91
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.92.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,898,337
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5063
FINDPEAKS_PERCENTILE: 87
HOTSPOT_SCORE: 0.5236
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.9966
IROC_PERCENTILE: 33
POISSON_SCORE: 0.5549
POISSON_PERCENTILE: 91
MAXIMUM_REPLICATE_CORRELATION: 0.98
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |