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Raw Signal Density Graphs of iPS DF 6.9 Cell Line Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from the iPS DF 6.9 Cell Line, Library SK469, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.iPS-6.9.02.01.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.H3K4me1.SK469.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iD6.9 H3K4me1 69
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line Histone H3K4me1 Library SK469 EA Release 5
NUMBER_OF_MAPPED_READS: 18,997,154
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.13
FINDPEAKS_PERCENTILE: 20
HOTSPOT_SCORE: 0.26
HOTSPOT_PERCENTILE: 24
IROC_SCORE: 0.9
IROC_PERCENTILE: 17
POISSON_SCORE: 0.43
POISSON_PERCENTILE: 39
MAXIMUM_REPLICATE_CORRELATION: 0.88
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.H3K4me1.SK469.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iD6.9 H3K4me1 69
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line Histone H3K4me1 Library SK469 EA Release 5
NUMBER_OF_MAPPED_READS: 18,997,154
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.13
FINDPEAKS_PERCENTILE: 20
HOTSPOT_SCORE: 0.26
HOTSPOT_PERCENTILE: 24
IROC_SCORE: 0.9
IROC_PERCENTILE: 17
POISSON_SCORE: 0.43
POISSON_PERCENTILE: 39
MAXIMUM_REPLICATE_CORRELATION: 0.88
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