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Raw Signal Density Graphs of H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from the H1 BMP4 Derived Trophoblast Cultured Cells, Library LH2, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.BMP4T.01.01.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me3.LH2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: HBDT H3K4me3 H2
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me3 Library LH2 EA Release 5
NUMBER_OF_MAPPED_READS: 19,839,737
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.17
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.28
HOTSPOT_PERCENTILE: 41
IROC_SCORE: 0.81
IROC_PERCENTILE: 6
POISSON_SCORE: 0.37
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K4me3.LH2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: HBDT H3K4me3 H2
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me3 Library LH2 EA Release 5
NUMBER_OF_MAPPED_READS: 19,839,737
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.17
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.28
HOTSPOT_PERCENTILE: 41
IROC_SCORE: 0.81
IROC_PERCENTILE: 6
POISSON_SCORE: 0.37
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: 0.97
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